Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe family protein | RCA23_RS00750 | Not Available | Negative | 159344 - 160108 | 26754.0 |
| plp-dependent aminotransferase family protein | RCA23_RS00755 | Not Available | Negative | 160108 - 161562 | 54011.6 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | RCA23_RS00760 | Not Available | Negative | 161716 - 163104 | 50226.9 |
| abc transporter substrate-binding protein | RCA23_RS00765 | Not Available | Positive | 163573 - 164568 | 33911.1 |
| taurine abc transporter atp-binding protein | RCA23_RS00770 | Not Available | Positive | 164690 - 165496 | 29596.4 |
| abc transporter permease subunit | RCA23_RS00775 | Not Available | Positive | 165502 - 166803 | 47033.2 |
| fad-dependent oxidoreductase | RCA23_RS00780 | Not Available | Negative | 166847 - 169252 | 88054.7 |
| trimethylamine methyltransferase family protein | RCA23_RS00785 | Not Available | Positive | 169408 - 170925 | 54112.7 |
| 3-hydroxyacyl-coa dehydrogenase/enoyl-coa hydratase family protein | RCA23_RS00790 | Not Available | Negative | 170928 - 173231 | 83588.4 |
| alpha/beta fold hydrolase | RCA23_RS00795 | Not Available | Negative | 173246 - 174034 | 27729.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
