Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiouridine(34) synthase mnma | RCA23_RS07805 | Not Available | Negative | 1645189 - 1646325 | 41200.0 |
| duf1153 domain-containing protein | RCA23_RS07810 | Not Available | Positive | 1646437 - 1646721 | 10688.8 |
| response regulator transcription factor ctra | RCA23_RS07815 | Not Available | Positive | 1646802 - 1647515 | 26714.3 |
| nad-dependent dna ligase liga | RCA23_RS07820 | Not Available | Positive | 1647766 - 1649886 | 76724.2 |
| atp-dependent dna helicase recg | RCA23_RS07825 | Not Available | Positive | 1649883 - 1651973 | 75428.6 |
| hypothetical protein | RCA23_RS16500 | Not Available | Positive | 1652066 - 1652209 | 5248.39 |
| hint domain-containing protein | RCA23_RS15980 | Not Available | Negative | 1652261 - 1653286 | 37533.8 |
| iron-sulfur cluster assembly scaffold protein | RCA23_RS07835 | Not Available | Negative | 1653390 - 1653842 | 15620.8 |
| phosphoribosyl-amp cyclohydrolase | RCA23_RS07840 | Not Available | Positive | 1653910 - 1654266 | 13434.0 |
| trna glutamyl-q(34) synthetase gluqrs | RCA23_RS07845 | Not Available | Negative | 1654284 - 1655153 | 31264.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
