Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyprenyl diphosphate synthase | RCA23_RS07755 | Not Available | Positive | 1634856 - 1635563 | 26519.9 |
| phosphatidate cytidylyltransferase | RCA23_RS07760 | Not Available | Positive | 1635560 - 1636345 | 27541.7 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | RCA23_RS07765 | Not Available | Positive | 1636345 - 1637505 | 41697.2 |
| rip metalloprotease rsep | RCA23_RS07770 | Not Available | Positive | 1637498 - 1638829 | 47130.5 |
| outer membrane protein assembly factor bama | RCA23_RS07775 | Not Available | Positive | 1638952 - 1641297 | 86409.4 |
| omph family outer membrane protein | RCA23_RS07780 | Not Available | Positive | 1641315 - 1641863 | 20525.5 |
| 3-hydroxyacyl-acp dehydratase fabz | RCA23_RS07785 | Not Available | Positive | 1641972 - 1642433 | 16893.8 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | RCA23_RS07790 | Not Available | Positive | 1642430 - 1643227 | 27949.7 |
| lpxi family protein | RCA23_RS07795 | Not Available | Positive | 1643232 - 1644035 | 28130.4 |
| lipid-a-disaccharide synthase | RCA23_RS07800 | Not Available | Positive | 1644032 - 1645186 | 41399.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
