Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siroheme synthase cysg | RCA23_RS07360 | Not Available | Negative | 1545834 - 1547228 | 50155.3 |
| lrp/asnc family transcriptional regulator | RCA23_RS07365 | Not Available | Positive | 1547360 - 1547827 | 17492.1 |
| Trna-asp | Not Available | Not Available | Positive | 1547978 - 1548054 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 1548079 - 1548155 | Not Available |
| m20/m25/m40 family metallo-hydrolase | RCA23_RS07380 | Not Available | Negative | 1548220 - 1549602 | 49710.9 |
| rodz domain-containing protein | RCA23_RS07385 | Not Available | Positive | 1549887 - 1551119 | 44760.5 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | RCA23_RS07390 | Not Available | Positive | 1551156 - 1552289 | 40193.3 |
| m48 family metalloprotease | RCA23_RS07395 | Not Available | Negative | 1552286 - 1553599 | 47312.6 |
| pyridoxal phosphate-dependent aminotransferase | RCA23_RS07400 | Not Available | Positive | 1553648 - 1554796 | 41681.1 |
| penicillin-binding protein 1a | RCA23_RS07405 | Not Available | Positive | 1554989 - 1557526 | 92459.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
