Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| smp-30/gluconolactonase/lre family protein | RCA23_RS00700 | Not Available | Negative | 148786 - 149622 | 30068.2 |
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | RCA23_RS00705 | Not Available | Negative | 149616 - 150218 | 20625.8 |
| 2-dehydro-3-deoxygalactonokinase | RCA23_RS00710 | Not Available | Negative | 150215 - 151120 | 32293.3 |
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS00715 | Not Available | Negative | 151117 - 151884 | 27180.3 |
| alpha-galactosidase | RCA23_RS00720 | Not Available | Negative | 151929 - 154013 | 78132.8 |
| carbohydrate abc transporter permease | RCA23_RS00725 | Not Available | Negative | 154043 - 154888 | 31726.8 |
| carbohydrate abc transporter permease | RCA23_RS00730 | Not Available | Negative | 154920 - 155864 | 35686.1 |
| extracellular solute-binding protein | RCA23_RS00735 | Not Available | Negative | 156014 - 157270 | 46285.6 |
| iclr family transcriptional regulator | RCA23_RS00740 | Not Available | Positive | 157460 - 158245 | 28933.5 |
| abc transporter atp-binding protein | RCA23_RS00745 | Not Available | Positive | 158266 - 159324 | 38105.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
