Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoglutarate dehydrogenase e1 component | RCA23_RS07310 | Not Available | Negative | 1534895 - 1537852 | 110281.0 |
| succinate--coa ligase subunit alpha | RCA23_RS07315 | Not Available | Negative | 1538009 - 1538893 | 30419.7 |
| adp-forming succinate--coa ligase subunit beta | RCA23_RS07320 | Not Available | Negative | 1538973 - 1540169 | 42298.0 |
| acyl-coa dehydrogenase | RCA23_RS07325 | Not Available | Negative | 1540356 - 1541555 | 43150.9 |
| translation initiation factor if-3 | RCA23_RS07330 | Not Available | Negative | 1541704 - 1542249 | 20903.6 |
| ferredoxin--nadp reductase | RCA23_RS07335 | Not Available | Negative | 1542341 - 1543174 | 30846.9 |
| duf934 domain-containing protein | RCA23_RS07340 | Not Available | Negative | 1543234 - 1543626 | 14633.2 |
| hypothetical protein | RCA23_RS07345 | Not Available | Negative | 1543641 - 1543877 | 8557.51 |
| nitrite/sulfite reductase | RCA23_RS07350 | Not Available | Negative | 1543881 - 1545545 | 61557.1 |
| duf2849 domain-containing protein | RCA23_RS07355 | Not Available | Negative | 1545547 - 1545843 | 10742.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
