Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | RCA23_RS07265 | Not Available | Negative | 1525748 - 1526125 | 13129.3 |
| tyrosine-type recombinase/integrase | RCA23_RS15970 | Not Available | Negative | 1526337 - 1527611 | 47943.6 |
| hypothetical protein | RCA23_RS16840 | Not Available | Negative | 1527864 - 1527989 | 4490.32 |
| duf1461 domain-containing protein | RCA23_RS07275 | Not Available | Positive | 1528430 - 1529155 | 27278.9 |
| Trna-ala | Not Available | Not Available | Positive | 1529563 - 1529638 | Not Available |
| tigr02300 family protein | RCA23_RS07285 | Not Available | Negative | 1529710 - 1530033 | 11735.9 |
| m48 family metallopeptidase | RCA23_RS07290 | Not Available | Positive | 1530131 - 1530841 | 26784.6 |
| gntr family transcriptional regulator | RCA23_RS07295 | Not Available | Positive | 1530914 - 1531564 | 24076.7 |
| dihydrolipoyl dehydrogenase | RCA23_RS07300 | Not Available | Negative | 1531851 - 1533239 | 48611.6 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | RCA23_RS07305 | Not Available | Negative | 1533394 - 1534890 | 52219.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
