Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | RCA23_RS07005 | Not Available | Negative | 1479801 - 1481465 | 60058.1 |
| peptide chain release factor 3 | RCA23_RS07010 | Not Available | Negative | 1481634 - 1483232 | 59371.5 |
| hint domain-containing protein | RCA23_RS07015 | Not Available | Negative | 1483316 - 1484272 | 35393.9 |
| sdr family oxidoreductase | RCA23_RS07020 | Not Available | Positive | 1484470 - 1485249 | 26453.8 |
| methyltransferase domain-containing protein | RCA23_RS07025 | Not Available | Positive | 1485369 - 1486409 | 38278.3 |
| abc transporter atp-binding protein | RCA23_RS07030 | Not Available | Positive | 1486465 - 1487541 | 39056.1 |
| hth domain-containing protein | RCA23_RS07035 | Not Available | Negative | 1487555 - 1488238 | 25238.4 |
| twin-arginine translocase tata/tate family subunit | RCA23_RS07040 | Not Available | Positive | 1488355 - 1488582 | 7958.76 |
| sec-independent protein translocase protein tatb | RCA23_RS07045 | Not Available | Positive | 1488618 - 1489190 | 19889.2 |
| twin-arginine translocase subunit tatc | RCA23_RS07050 | Not Available | Positive | 1489187 - 1490077 | 32528.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
