Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sufe family protein | RCA23_RS06755 | Not Available | Positive | 1428736 - 1429146 | 14751.8 |
| duf1638 domain-containing protein | RCA23_RS06760 | Not Available | Negative | 1429143 - 1429787 | 24005.7 |
| b12-binding domain-containing protein | RCA23_RS06765 | Not Available | Negative | 1429871 - 1430578 | 25508.0 |
| betaine--homocysteine s-methyltransferase | RCA23_RS06770 | Not Available | Negative | 1430717 - 1431745 | 35979.6 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | RCA23_RS06775 | Not Available | Positive | 1432027 - 1432788 | 28364.3 |
| phosphoribosylformylglycinamidine synthase subunit purs | RCA23_RS06780 | Not Available | Positive | 1432805 - 1433035 | 8015.77 |
| phosphoribosylformylglycinamidine synthase subunit purq | RCA23_RS06785 | Not Available | Positive | 1433035 - 1433703 | 23550.9 |
| atp-binding protein | RCA23_RS06790 | Not Available | Positive | 1433749 - 1435512 | 64673.0 |
| sigma-54-dependent transcriptional regulator | RCA23_RS06795 | Not Available | Positive | 1435515 - 1436849 | 49195.4 |
| rne/rng family ribonuclease | RCA23_RS06800 | Not Available | Positive | 1437340 - 1440108 | 101006.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
