Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RCA23_RS06620 | Not Available | Negative | 1403495 - 1403986 | 18711.1 |
| is481 family transposase | RCA23_RS06630 | Not Available | Positive | 1404422 - 1405501 | 41054.3 |
| hypothetical protein | RCA23_RS16470 | Not Available | Positive | 1406125 - 1406265 | 5384.53 |
| recombinase family protein | RCA23_RS06635 | Not Available | Negative | 1406288 - 1406842 | 20340.9 |
| duf2147 domain-containing protein | RCA23_RS16250 | Not Available | Positive | 1407072 - 1407455 | 13943.9 |
| hypothetical protein | RCA23_RS06640 | Not Available | Positive | 1407754 - 1407981 | 7971.38 |
| is630 family transposase | RCA23_RS06645 | Not Available | Negative | 1408122 - 1409183 | 40632.6 |
| helix-turn-helix domain-containing protein | RCA23_RS06650 | Not Available | Negative | 1409327 - 1409665 | 12667.9 |
| 30s ribosomal protein s21 | RCA23_RS06655 | Not Available | Positive | 1410237 - 1410437 | 7806.56 |
| hypothetical protein | RCA23_RS16475 | Not Available | Positive | 1410572 - 1410739 | 6305.45 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
