Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vrr-nuc domain-containing protein | RCA23_RS06475 | Not Available | Negative | 1376135 - 1377304 | 45320.7 |
| hypothetical protein | RCA23_RS06480 | Not Available | Negative | 1377396 - 1377893 | 18989.0 |
| hypothetical protein | RCA23_RS06485 | Not Available | Positive | 1378121 - 1378447 | 12117.5 |
| Trna-asn | Not Available | Not Available | Positive | 1378720 - 1378794 | Not Available |
| mbl fold metallo-hydrolase | RCA23_RS06495 | Not Available | Negative | 1378858 - 1379733 | 31572.5 |
| atp-binding protein | RCA23_RS06500 | Not Available | Positive | 1379771 - 1381060 | 46988.7 |
| duf2059 domain-containing protein | RCA23_RS06505 | Not Available | Positive | 1381130 - 1381954 | 30831.2 |
| 50s ribosomal protein l21 | RCA23_RS06510 | Not Available | Positive | 1382123 - 1382731 | 20757.6 |
| 50s ribosomal protein l27 | RCA23_RS06515 | Not Available | Positive | 1382738 - 1383007 | 9492.41 |
| lyse family transporter | RCA23_RS06520 | Not Available | Positive | 1383122 - 1383730 | 21067.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
