Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycolate oxidase subunit glcf | RCA23_RS00600 | Not Available | Positive | 124996 - 126312 | 48212.6 |
| serine protease | RCA23_RS00605 | Not Available | Positive | 126476 - 127198 | 25677.2 |
| hypothetical protein | RCA23_RS00610 | Not Available | Negative | 127221 - 127514 | 10656.6 |
| glycosyl hydrolase family 18 protein | RCA23_RS00615 | Not Available | Negative | 127643 - 128506 | 31887.4 |
| hsp20 family protein | RCA23_RS00620 | Not Available | Positive | 129159 - 129614 | 16852.8 |
| nad-dependent succinate-semialdehyde dehydrogenase | RCA23_RS00625 | Not Available | Negative | 129680 - 131155 | 52500.1 |
| alpha/beta hydrolase | RCA23_RS00630 | Not Available | Positive | 131221 - 132024 | 28951.4 |
| hypothetical protein | RCA23_RS00635 | Not Available | Negative | 132021 - 132344 | 11690.7 |
| sdr family oxidoreductase | RCA23_RS00640 | Not Available | Negative | 132341 - 133081 | 25726.9 |
| hypothetical protein | RCA23_RS00645 | Not Available | Positive | 133264 - 133566 | 11074.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
