Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | RCA23_RS06045 | Not Available | Positive | 1282131 - 1282853 | 25605.6 |
| abc transporter substrate-binding protein | RCA23_RS06050 | Not Available | Positive | 1282882 - 1284033 | 40111.6 |
| abc transporter atp-binding protein | RCA23_RS06055 | Not Available | Positive | 1284085 - 1284783 | 24660.0 |
| branched-chain amino acid abc transporter permease | RCA23_RS06060 | Not Available | Positive | 1284783 - 1285679 | 31764.2 |
| abc transporter permease subunit | RCA23_RS06065 | Not Available | Positive | 1285676 - 1286698 | 36404.8 |
| acetamidase/formamidase family protein | RCA23_RS06070 | Not Available | Positive | 1286708 - 1287646 | 33101.4 |
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS06075 | Not Available | Positive | 1288141 - 1288902 | 26925.9 |
| Trna-asn | Not Available | Not Available | Positive | 1289325 - 1289396 | Not Available |
| tyrosine-type recombinase/integrase | RCA23_RS06085 | Not Available | Positive | 1289550 - 1290728 | 45219.3 |
| hypothetical protein | RCA23_RS06090 | Not Available | Positive | 1290725 - 1291072 | 13635.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
