Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plp-dependent aspartate aminotransferase family protein | RCA23_RS00550 | Not Available | Positive | 112575 - 113720 | 40500.3 |
| rrna large subunit pseudouridine synthase e | RCA23_RS00555 | Not Available | Positive | 113714 - 114265 | 20862.4 |
| duf1285 domain-containing protein | RCA23_RS00560 | Not Available | Negative | 114286 - 114867 | 21342.5 |
| moxr family atpase | RCA23_RS00565 | Not Available | Positive | 114939 - 115946 | 36399.4 |
| duf58 domain-containing protein | RCA23_RS00570 | Not Available | Positive | 115943 - 116806 | 31586.2 |
| duf4159 domain-containing protein | RCA23_RS00575 | Not Available | Positive | 116803 - 119550 | 98631.0 |
| membrane protein | RCA23_RS00580 | Not Available | Positive | 119547 - 121607 | 74713.0 |
| duf599 family protein | RCA23_RS00585 | Not Available | Negative | 121527 - 122318 | 28898.4 |
| fad-linked oxidase c-terminal domain-containing protein | RCA23_RS00590 | Not Available | Positive | 122397 - 123830 | 50873.2 |
| fad-binding protein | RCA23_RS00595 | Not Available | Positive | 123827 - 124996 | 41551.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
