Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is6 family transposase | RCA23_RS05810 | Not Available | Positive | 1226248 - 1226796 | 21738.2 |
| dienelactone hydrolase family protein | RCA23_RS05815 | Not Available | Positive | 1227061 - 1227807 | 26853.2 |
| l-glyceraldehyde 3-phosphate reductase | RCA23_RS05820 | Not Available | Negative | 1227804 - 1228835 | 37852.9 |
| mandelate racemase/muconate lactonizing enzyme family protein | RCA23_RS05825 | Not Available | Negative | 1229126 - 1230223 | 39311.9 |
| d-lyxose/d-mannose family sugar isomerase | RCA23_RS05830 | Not Available | Negative | 1230335 - 1231027 | 25425.9 |
| sensor histidine kinase | RCA23_RS05835 | Not Available | Negative | 1231231 - 1232598 | 49036.5 |
| response regulator transcription factor | RCA23_RS05840 | Not Available | Negative | 1232595 - 1233299 | 26172.7 |
| tricarboxylate transporter | RCA23_RS05845 | Not Available | Positive | 1233404 - 1234510 | 39102.3 |
| tripartite tricarboxylate transporter permease | RCA23_RS05850 | Not Available | Positive | 1234581 - 1236608 | 71420.3 |
| 4-oxalomesaconate tautomerase | RCA23_RS05855 | Not Available | Positive | 1236605 - 1237696 | 37921.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
