Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS05665 | Not Available | Negative | 1195860 - 1196618 | 26632.8 |
| glutathione s-transferase family protein | RCA23_RS05670 | Not Available | Negative | 1196637 - 1197455 | 30929.0 |
| aldehyde dehydrogenase family protein | RCA23_RS05675 | Not Available | Negative | 1197452 - 1198888 | 52044.2 |
| gntr family transcriptional regulator | RCA23_RS05680 | Not Available | Positive | 1199107 - 1199895 | 29761.1 |
| dde-type integrase/transposase/recombinase | RCA23_RS05685 | Not Available | Positive | 1200343 - 1200789 | 17747.2 |
| duf6538 domain-containing protein | RCA23_RS05690 | Not Available | Positive | 1200946 - 1202112 | 43367.1 |
| peptidoglycan-binding domain-containing protein | RCA23_RS05695 | Not Available | Positive | 1202483 - 1204498 | 76830.2 |
| gntr family transcriptional regulator | RCA23_RS05700 | Not Available | Negative | 1205189 - 1205908 | 26615.1 |
| abc transporter substrate-binding protein | RCA23_RS05705 | Not Available | Positive | 1206137 - 1207324 | 42219.9 |
| branched-chain amino acid abc transporter permease | RCA23_RS05710 | Not Available | Positive | 1207442 - 1208311 | 31083.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
