Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| division/cell wall cluster transcriptional repressor mraz | RCA23_RS05270 | Not Available | Positive | 1100315 - 1100818 | 19232.7 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | RCA23_RS05275 | Not Available | Positive | 1100821 - 1101810 | 35605.4 |
| cell division protein ftsl | RCA23_RS05280 | Not Available | Positive | 1101807 - 1102151 | 13074.8 |
| peptidoglycan d,d-transpeptidase ftsi family protein | RCA23_RS05285 | Not Available | Positive | 1102148 - 1103929 | 64333.7 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | RCA23_RS05290 | Not Available | Positive | 1103952 - 1105430 | 51343.0 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | RCA23_RS05295 | Not Available | Positive | 1105430 - 1106848 | 50072.4 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | RCA23_RS05300 | Not Available | Positive | 1106866 - 1107948 | 38599.3 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | RCA23_RS05305 | Not Available | Positive | 1107987 - 1109384 | 49508.0 |
| glycosyltransferase | RCA23_RS05310 | Not Available | Positive | 1109456 - 1110160 | 26536.9 |
| alpha-1,2-fucosyltransferase | RCA23_RS05315 | Not Available | Negative | 1110157 - 1110834 | 25880.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
