Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | RCA23_RS05175 | Not Available | Positive | 1079592 - 1080008 | 15342.3 |
| hypothetical protein | RCA23_RS05180 | Not Available | Negative | 1080018 - 1080998 | 37470.7 |
| choline dehydrogenase | RCA23_RS05185 | Not Available | Positive | 1081235 - 1082887 | 59933.3 |
| Trna-pseudo | Not Available | Not Available | Positive | 1082951 - 1083034 | Not Available |
| hypothetical protein | RCA23_RS16425 | Not Available | Positive | 1083179 - 1083343 | 6065.4 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | RCA23_RS05190 | Not Available | Positive | 1083554 - 1084330 | 27441.1 |
| phosphoribosyl-atp diphosphatase | RCA23_RS05195 | Not Available | Negative | 1084342 - 1084647 | 10996.1 |
| imidazole glycerol phosphate synthase subunit hisf | RCA23_RS05200 | Not Available | Negative | 1084644 - 1085405 | 26360.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | RCA23_RS05205 | Not Available | Negative | 1085434 - 1086150 | 24721.6 |
| imidazole glycerol phosphate synthase subunit hish | RCA23_RS05210 | Not Available | Negative | 1086180 - 1086818 | 23313.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
