Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | RCA23_RS05120 | Not Available | Negative | 1069269 - 1070216 | 35248.8 |
| scp2 sterol-binding domain-containing protein | RCA23_RS05125 | Not Available | Negative | 1070216 - 1070506 | 9886.69 |
| tetratricopeptide repeat protein | RCA23_RS05130 | Not Available | Positive | 1070580 - 1071140 | 19967.2 |
| helicase-related protein | RCA23_RS05135 | Not Available | Positive | 1071160 - 1073967 | 102968.0 |
| s4 domain-containing protein | RCA23_RS05140 | Not Available | Positive | 1073964 - 1074341 | 14017.1 |
| ferredoxin fdxa | RCA23_RS05145 | Not Available | Positive | 1074410 - 1074748 | 12583.6 |
| card family transcriptional regulator | RCA23_RS05150 | Not Available | Positive | 1074901 - 1075419 | 19265.2 |
| adenosylcobinamide-gdp ribazoletransferase | RCA23_RS05155 | Not Available | Negative | 1075490 - 1076242 | 25514.5 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | RCA23_RS05160 | Not Available | Positive | 1076326 - 1077339 | 34282.9 |
| hypothetical protein | RCA23_RS05165 | Not Available | Negative | 1077345 - 1079387 | 71311.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
