Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| folate-binding protein ygfz | RCA23_RS04980 | Not Available | Negative | 1041005 - 1041736 | 26854.6 |
| tigr04283 family arsenosugar biosynthesis glycosyltransferase | RCA23_RS04985 | Not Available | Positive | 1041797 - 1042474 | 24169.2 |
| abc transporter transmembrane domain-containing protein | RCA23_RS04990 | Not Available | Negative | 1042530 - 1044293 | 64004.3 |
| alanine--glyoxylate aminotransferase family protein | RCA23_RS04995 | Not Available | Positive | 1044403 - 1045608 | 42928.7 |
| pyridoxal phosphate-dependent aminotransferase | RCA23_RS05000 | Not Available | Negative | 1045610 - 1046719 | 39535.2 |
| valine--trna ligase | RCA23_RS05005 | Not Available | Negative | 1046755 - 1049682 | 108145.0 |
| hd domain-containing protein | RCA23_RS05010 | Not Available | Negative | 1049744 - 1050337 | 22605.3 |
| phytanoyl-coa dioxygenase family protein | RCA23_RS05015 | Not Available | Negative | 1050337 - 1051209 | 31944.1 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RCA23_RS05020 | Not Available | Positive | 1051351 - 1053636 | 81964.8 |
| duf2235 domain-containing protein | RCA23_RS05025 | Not Available | Positive | 1053643 - 1054722 | 40111.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
