Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas savastanoi |
| Strain | pv. retacarpa |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 28 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Retama sphaerocarpa |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1214292 bp
Thymine Count
1216369 bp
Guanine Count
1685868 bp
Cytosine Count
1679568 bp
Genome Length
5831912 bp
Protein-coding Genes
5273 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii effector hopaa1-1 | ALR00_00367 | Not Available | Positive | 283966 - 284805 | 28424.6 |
| pectate-binding harpin | ALR00_00368 | Not Available | Negative | 284892 - 286139 | 43103.0 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | ALR00_00369 | Not Available | Positive | 286443 - 286937 | 18162.5 |
| effector protein hopm1 | ALR00_00370 | Not Available | Positive | 287146 - 289167 | 71106.7 |
| avirulence protein avrf | ALR00_00371 | Not Available | Positive | 289245 - 289634 | 14339.1 |
| type iii effector | ALR00_04327 | Not Available | Negative | 289683 - 294899 | 188860.0 |
| hrp-associated lytic transglycosylase | ALR00_00373 | Not Available | Positive | 295058 - 296521 | 53477.9 |
| type iii secretion system transcriptional regulator | ALR00_00374 | Not Available | Positive | 297604 - 298524 | 34299.7 |
| type iii secretion system transcriptional regulator | ALR00_00375 | Not Available | Positive | 298575 - 299483 | 33270.3 |
| type iii secretion system pilin protein | ALR00_00376 | Not Available | Positive | 299575 - 299901 | 11163.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.







