Pseudobacter ginsenosidimutans str. DSM 18116

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Pseudobacter

Description

Pseudobacter ginsenosidimutans str. DSM 18116 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic respiration and is categorized as non-spore-forming. This microbial strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure typically features a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches. As an aerobic organism, Pseudobacter ginsenosidimutans str. DSM 18116 likely plays a role in the carbon cycle by utilizing oxygen for metabolic processes, which may include the degradation of organic matter in its environment. The absence of sporulation indicates that this organism may rely on other survival strategies rather than forming spores to withstand unfavorable conditions. The specific adaptation to a moderate temperature could imply that Pseudobacter ginsenosidimutans str. DSM 18116 is well-suited to environments such as soil or plant rhizospheres, where temperatures can fluctuate but often remain within a temperate range. This adaptability could render the strain significant in biotechnological applications, particularly those related to the degradation of plant-derived compounds, such as ginsenosides, which are of interest in pharmacological studies. Further exploration of its metabolic capabilities could reveal insights into its ecological role and potential applications in bioremediation or natural product synthesis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusPseudobacter
SpeciesPseudobacter ginsenosidimutans
StrainDSM 18116

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobacter ginsenosidimutans strain DSM 18116 Ga0310513_19,

Gene Summary

Adenine Count

2059481 bp

Thymine Count

2069007 bp

Guanine Count

1828856 bp

Cytosine Count

1814537 bp

Genome Length

7772562 bp

Protein-coding Genes

6020 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gluconate kinase (fggy family)EV199_5640Not AvailableNegative7170484 - 717200755941.3
arac-like dna-binding proteinEV199_5641Not AvailableNegative7172018 - 717289933644.5
tonb-linked susc/raga family outer membrane proteinEV199_5642Not AvailablePositive7173080 - 7176319116796.0
susd-like starch-binding protein associating with outer membraneEV199_5643Not AvailablePositive7176306 - 717793158394.7
nadp-dependent aldehyde dehydrogenaseEV199_5644Not AvailablePositive7177979 - 717957457003.4
dihydroxyacid dehydrataseEV199_5645Not AvailablePositive7179599 - 718131462320.5
2-dehydro-3-deoxy-d-arabinonate dehydrataseEV199_5646Not AvailablePositive7181359 - 718219230714.5
gluconate permease gnttEV199_5647Not AvailablePositive7182235 - 718354546953.4
hypothetical proteinEV199_5648Not AvailableNegative7183688 - 718607891201.2
glycosyl hydrolase family 97EV199_5649Not AvailablePositive7186297 - 718826773567.7

Displaying genes 5591 – 5600 of 6070 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.