Pseudobacter ginsenosidimutans str. DSM 18116

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Pseudobacter

Description

Pseudobacter ginsenosidimutans str. DSM 18116 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic respiration and is categorized as non-spore-forming. This microbial strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure typically features a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches. As an aerobic organism, Pseudobacter ginsenosidimutans str. DSM 18116 likely plays a role in the carbon cycle by utilizing oxygen for metabolic processes, which may include the degradation of organic matter in its environment. The absence of sporulation indicates that this organism may rely on other survival strategies rather than forming spores to withstand unfavorable conditions. The specific adaptation to a moderate temperature could imply that Pseudobacter ginsenosidimutans str. DSM 18116 is well-suited to environments such as soil or plant rhizospheres, where temperatures can fluctuate but often remain within a temperate range. This adaptability could render the strain significant in biotechnological applications, particularly those related to the degradation of plant-derived compounds, such as ginsenosides, which are of interest in pharmacological studies. Further exploration of its metabolic capabilities could reveal insights into its ecological role and potential applications in bioremediation or natural product synthesis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusPseudobacter
SpeciesPseudobacter ginsenosidimutans
StrainDSM 18116

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobacter ginsenosidimutans strain DSM 18116 Ga0310513_19,

Gene Summary

Adenine Count

2059481 bp

Thymine Count

2069007 bp

Guanine Count

1828856 bp

Cytosine Count

1814537 bp

Genome Length

7772562 bp

Protein-coding Genes

6020 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine c-acetyltransferaseEV199_5439Not AvailablePositive6909568 - 691083046467.4
thioredoxin-like proteinEV199_5440Not AvailableNegative6911266 - 691179320544.5
4-hydroxy-3-polyprenylbenzoate decarboxylaseEV199_5441Not AvailablePositive6911833 - 691241421394.9
outer membrane lipoprotein-sorting proteinEV199_5442Not AvailableNegative6912425 - 691307224088.9
s-dna-t family dna segregation atpase ftsk/spoiiieEV199_5443Not AvailableNegative6913199 - 691580896639.1
signal transduction histidine kinaseEV199_5444Not AvailablePositive6915922 - 691784774242.1
uncharacterized membrane protein ygdd (tmem256/duf423 family)EV199_5446Not AvailableNegative6918900 - 691928913863.3
shikimate kinaseEV199_5447Not AvailableNegative6919282 - 691979119833.1
glutaryl-coa dehydrogenaseEV199_5448Not AvailableNegative6919813 - 692099443460.4
rna polymerase sigma-70 factor (ecf subfamily)EV199_5449Not AvailablePositive6921112 - 692166921232.4

Displaying genes 5391 – 5400 of 6070 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.