Pseudobacter ginsenosidimutans str. DSM 18116

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Pseudobacter

Description

Pseudobacter ginsenosidimutans str. DSM 18116 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic respiration and is categorized as non-spore-forming. This microbial strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure typically features a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches. As an aerobic organism, Pseudobacter ginsenosidimutans str. DSM 18116 likely plays a role in the carbon cycle by utilizing oxygen for metabolic processes, which may include the degradation of organic matter in its environment. The absence of sporulation indicates that this organism may rely on other survival strategies rather than forming spores to withstand unfavorable conditions. The specific adaptation to a moderate temperature could imply that Pseudobacter ginsenosidimutans str. DSM 18116 is well-suited to environments such as soil or plant rhizospheres, where temperatures can fluctuate but often remain within a temperate range. This adaptability could render the strain significant in biotechnological applications, particularly those related to the degradation of plant-derived compounds, such as ginsenosides, which are of interest in pharmacological studies. Further exploration of its metabolic capabilities could reveal insights into its ecological role and potential applications in bioremediation or natural product synthesis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusPseudobacter
SpeciesPseudobacter ginsenosidimutans
StrainDSM 18116

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobacter ginsenosidimutans strain DSM 18116 Ga0310513_19,

Gene Summary

Adenine Count

2059481 bp

Thymine Count

2069007 bp

Guanine Count

1828856 bp

Cytosine Count

1814537 bp

Genome Length

7772562 bp

Protein-coding Genes

6020 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative mfs family arabinose efflux permeaseEV199_0392Not AvailablePositive554048 - 55527144007.9
uncharacterized protein ybjq (upf0145 family)EV199_0393Not AvailableNegative555282 - 55559910971.3
putative secreted protein (por secretion system target)EV199_0394Not AvailablePositive555756 - 55708746314.0
glycosyl hydrolase family 28EV199_0395Not AvailablePositive557132 - 55879660773.5
laci family transcriptional regulatorEV199_0396Not AvailableNegative558816 - 55982937745.1
tonb-linked susc/raga family outer membrane proteinEV199_0397Not AvailablePositive559977 - 563180117544.0
putative outer membrane starch-binding proteinEV199_0398Not AvailablePositive563200 - 56483761336.9
uncharacterized protein duf5017EV199_0399Not AvailablePositive564865 - 56575833008.8
hypothetical proteinEV199_0400Not AvailablePositive565758 - 56837697674.7
alpha-glucosidaseEV199_0401Not AvailablePositive568395 - 57026970601.3

Displaying genes 391 – 400 of 6070 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.