Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Pacificibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Pacificibacter |
| Species | Pacificibacter marinus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | ovoid |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
929310 bp
Thymine Count
947708 bp
Guanine Count
1028045 bp
Cytosine Count
1009585 bp
Genome Length
3914648 bp
Protein-coding Genes
3789 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoadipate coa-transferase subunit a | PAM7971_00484 | Not Available | Positive | 494898 - 495617 | 25643.8 |
| 3-oxoadipate coa-transferase subunit b | PAM7971_00485 | Not Available | Positive | 495617 - 496291 | 23747.4 |
| beta-ketoadipyl-coa thiolase | PAM7971_00486 | Not Available | Positive | 496294 - 497499 | 41673.3 |
| deoxyribose operon repressor | PAM7971_00487 | Not Available | Negative | 497599 - 498363 | 27627.2 |
| deoxyribose-phosphate aldolase | PAM7971_00488 | Not Available | Positive | 498495 - 499499 | 35765.2 |
| putative aldehyde dehydrogenase alda | PAM7971_00489 | Not Available | Positive | 499505 - 501868 | 83445.8 |
| ribokinase | PAM7971_00490 | Not Available | Positive | 501913 - 502875 | 33131.2 |
| trehalose transport system permease protein suga | PAM7971_00491 | Not Available | Positive | 502872 - 503747 | 32474.5 |
| inner membrane abc transporter permease protein ycjp | PAM7971_00492 | Not Available | Positive | 503744 - 504772 | 37643.8 |
| putative abc transporter-binding protein precursor | PAM7971_00493 | Not Available | Positive | 504822 - 506273 | 52381.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
