Pacificibacter marinus

ovoidaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pacificibacter

Description

Pacificibacter marinus is a Gram-negative, ovoid bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its distinct morphological shape, which contributes to its classification within the broader bacterial community. As a Gram-negative organism, Pacificibacter marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stresses. The preference for aerobic conditions suggests that this bacterium relies on oxygen for energy production, potentially positioning it within marine ecosystems where oxygen is readily available. The optimal growth temperature of 29.0°C indicates that Pacificibacter marinus is well-adapted to moderately warm aquatic environments, which may include coastal or open ocean habitats. This temperature preference highlights its potential role in biogeochemical processes that occur in marine ecosystems, particularly those linked to organic matter decomposition and nutrient cycling. Given its specific growth requirements and morphological characteristics, Pacificibacter marinus may serve as an important indicator species for assessing the health of marine environments, particularly in relation to temperature and oxygen levels. Its presence could provide insights into the dynamics of microbial communities in response to changing marine conditions, such as climate change or pollution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPacificibacter
SpeciesPacificibacter marinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapeovoid
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificibacter marinus strain CECT 7971 genome assembly, contig:

Gene Summary

Adenine Count

929310 bp

Thymine Count

947708 bp

Guanine Count

1028045 bp

Cytosine Count

1009585 bp

Genome Length

3914648 bp

Protein-coding Genes

3789 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPAM7971_03533Not AvailablePositive3564613 - 35647023336.24
hypothetical proteinPAM7971_03534Not AvailablePositive3565742 - 35659005320.02
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenasePAM7971_03535Not AvailableNegative3565897 - 356666726866.4
putative zinc-type alcohol dehydrogenase-like protein yjmdPAM7971_03536Not AvailableNegative3566664 - 356769836800.4
mandelate racemasePAM7971_03537Not AvailableNegative3567711 - 356880839457.3
ribose transport system permease protein rbscPAM7971_03538Not AvailableNegative3568805 - 356980634750.2
ribose transport system permease protein rbscPAM7971_03539Not AvailableNegative3569809 - 357078933593.4
ribose import atp-binding protein rbsaPAM7971_03540Not AvailableNegative3570786 - 357230354607.2
abc transporter periplasmic-binding protein ytfq precursorPAM7971_03541Not AvailableNegative3572384 - 357335834641.1
lactaldehyde dehydrogenasePAM7971_03542Not AvailableNegative3573416 - 357488552228.5

Displaying genes 3531 – 3540 of 3859 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.