Pacificibacter marinus

ovoidaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pacificibacter

Description

Pacificibacter marinus is a Gram-negative, ovoid bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its distinct morphological shape, which contributes to its classification within the broader bacterial community. As a Gram-negative organism, Pacificibacter marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stresses. The preference for aerobic conditions suggests that this bacterium relies on oxygen for energy production, potentially positioning it within marine ecosystems where oxygen is readily available. The optimal growth temperature of 29.0°C indicates that Pacificibacter marinus is well-adapted to moderately warm aquatic environments, which may include coastal or open ocean habitats. This temperature preference highlights its potential role in biogeochemical processes that occur in marine ecosystems, particularly those linked to organic matter decomposition and nutrient cycling. Given its specific growth requirements and morphological characteristics, Pacificibacter marinus may serve as an important indicator species for assessing the health of marine environments, particularly in relation to temperature and oxygen levels. Its presence could provide insights into the dynamics of microbial communities in response to changing marine conditions, such as climate change or pollution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPacificibacter
SpeciesPacificibacter marinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapeovoid
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificibacter marinus strain CECT 7971 genome assembly, contig:

Gene Summary

Adenine Count

929310 bp

Thymine Count

947708 bp

Guanine Count

1028045 bp

Cytosine Count

1009585 bp

Genome Length

3914648 bp

Protein-coding Genes

3789 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPAM7971_02991Not AvailablePositive3041065 - 304189229326.4
hypothetical proteinPAM7971_02992Not AvailableNegative3041986 - 304373162861.5
1,5-anhydro-d-fructose reductasePAM7971_02993Not AvailableNegative3043731 - 304475337040.3
ribose transport system permease protein rbscPAM7971_02994Not AvailableNegative3044757 - 304581836528.6
ribose import atp-binding protein rbsaPAM7971_02995Not AvailableNegative3045818 - 304735655766.8
hypothetical proteinPAM7971_02996Not AvailableNegative3047356 - 304801223326.5
d-ribose-binding periplasmic protein precursorPAM7971_02997Not AvailableNegative3048081 - 304902833388.4
hth-type transcriptional regulator lutrPAM7971_02998Not AvailableNegative3049352 - 305016130051.1
ribulose bisphosphate carboxylase-like protein 2PAM7971_02999Not AvailablePositive3050288 - 305153844653.6
putative sugar phosphate isomerase ywlfPAM7971_03000Not AvailableNegative3051607 - 305205615111.7

Displaying genes 2991 – 3000 of 3859 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.