Pacificibacter marinus

ovoidaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pacificibacter

Description

Pacificibacter marinus is a Gram-negative, ovoid bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its distinct morphological shape, which contributes to its classification within the broader bacterial community. As a Gram-negative organism, Pacificibacter marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stresses. The preference for aerobic conditions suggests that this bacterium relies on oxygen for energy production, potentially positioning it within marine ecosystems where oxygen is readily available. The optimal growth temperature of 29.0°C indicates that Pacificibacter marinus is well-adapted to moderately warm aquatic environments, which may include coastal or open ocean habitats. This temperature preference highlights its potential role in biogeochemical processes that occur in marine ecosystems, particularly those linked to organic matter decomposition and nutrient cycling. Given its specific growth requirements and morphological characteristics, Pacificibacter marinus may serve as an important indicator species for assessing the health of marine environments, particularly in relation to temperature and oxygen levels. Its presence could provide insights into the dynamics of microbial communities in response to changing marine conditions, such as climate change or pollution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPacificibacter
SpeciesPacificibacter marinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapeovoid
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificibacter marinus strain CECT 7971 genome assembly, contig:

Gene Summary

Adenine Count

929310 bp

Thymine Count

947708 bp

Guanine Count

1028045 bp

Cytosine Count

1009585 bp

Genome Length

3914648 bp

Protein-coding Genes

3789 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxoadipate enol-lactonase 2PAM7971_02921Not AvailableNegative2970861 - 297164928536.2
asp/glu/hydantoin racemasePAM7971_02922Not AvailableNegative2971893 - 297263626624.1
acylamidasePAM7971_02923Not AvailableNegative2972633 - 297405451054.9
sialic acid trap transporter permease protein siatPAM7971_02924Not AvailableNegative2974054 - 297534645234.4
2,3-diketo-l-gulonate trap transporter small permease protein yiamPAM7971_02925Not AvailableNegative2975350 - 297587118982.6
2,3-diketo-l-gulonate-binding periplasmic protein yiao precursorPAM7971_02926Not AvailableNegative2975988 - 297697434690.3
d-hydantoinasePAM7971_02927Not AvailableNegative2977040 - 297850653385.3
putative hth-type transcriptional regulator ydfhPAM7971_02928Not AvailablePositive2978689 - 297940226458.8
dna-binding transcriptional regulator hexrPAM7971_02929Not AvailableNegative2979416 - 298028832964.3
n-formylglutamate amidohydrolasePAM7971_02930Not AvailablePositive2980404 - 298116827368.3

Displaying genes 2921 – 2930 of 3859 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.