Pacificibacter marinus

ovoidaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pacificibacter

Description

Pacificibacter marinus is a Gram-negative, ovoid bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its distinct morphological shape, which contributes to its classification within the broader bacterial community. As a Gram-negative organism, Pacificibacter marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stresses. The preference for aerobic conditions suggests that this bacterium relies on oxygen for energy production, potentially positioning it within marine ecosystems where oxygen is readily available. The optimal growth temperature of 29.0°C indicates that Pacificibacter marinus is well-adapted to moderately warm aquatic environments, which may include coastal or open ocean habitats. This temperature preference highlights its potential role in biogeochemical processes that occur in marine ecosystems, particularly those linked to organic matter decomposition and nutrient cycling. Given its specific growth requirements and morphological characteristics, Pacificibacter marinus may serve as an important indicator species for assessing the health of marine environments, particularly in relation to temperature and oxygen levels. Its presence could provide insights into the dynamics of microbial communities in response to changing marine conditions, such as climate change or pollution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPacificibacter
SpeciesPacificibacter marinus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapeovoid
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificibacter marinus strain CECT 7971 genome assembly, contig:

Gene Summary

Adenine Count

929310 bp

Thymine Count

947708 bp

Guanine Count

1028045 bp

Cytosine Count

1009585 bp

Genome Length

3914648 bp

Protein-coding Genes

3789 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophan 2,3-dioxygenasePAM7971_01466Not AvailablePositive1497983 - 149872928839.7
fructose-bisphosphate aldolasePAM7971_01467Not AvailableNegative1498828 - 149965829411.3
5-deoxy-glucuronate isomerasePAM7971_01468Not AvailableNegative1499655 - 150050931717.6
5-dehydro-2-deoxygluconokinasePAM7971_01469Not AvailableNegative1500519 - 150149934146.7
glucose-6-phosphate 3-dehydrogenasePAM7971_01470Not AvailablePositive1501691 - 150278839565.0
hypothetical proteinPAM7971_01471Not AvailablePositive1502810 - 15029113565.36
glucose--fructose oxidoreductase precursorPAM7971_01472Not AvailablePositive1502960 - 150409340863.5
ribose operon repressorPAM7971_01473Not AvailableNegative1504090 - 150509436787.9
helix-turn-helix domain proteinPAM7971_01474Not AvailableNegative1505210 - 150601931166.6
asp/glu/hydantoin racemasePAM7971_01475Not AvailablePositive1506127 - 150685526434.9

Displaying genes 1471 – 1480 of 3859 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.