Agathobacter rectalis DSM 17629

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis DSM 17629 is a Gram-positive, rod-shaped bacterium that functions as a chemoheterotroph, obtaining its energy from organic compounds. This species is nonsporulating and thrives optimally at a temperature of 37.0°C, which is indicative of its potential association with warm-blooded hosts or environments that maintain similar temperatures. A. rectalis is classified as an anaerobe, meaning it requires an oxygen-free environment for growth, thereby suggesting its adaptation to specific niches where oxygen levels are low or absent. The habitat of A. rectalis is diverse, indicating its ability to colonize and survive in various anaerobic environments. This flexibility may allow it to play a role in the complex microbial communities found in the gastrointestinal tracts of hosts. The presence of A. rectalis in such habitats could contribute to the degradation of organic matter and the fermentation processes that are essential for nutrient cycling and maintaining gut health. Given its anaerobic nature and chemoheterotrophic lifestyle, A. rectalis may be involved in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are important for gut health and host metabolism. This highlights A. rectalis as a potentially significant player in the gut microbiome, underscoring the importance of anaerobic bacteria in maintaining the ecological balance within various habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
StrainDSM 17629

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis DSM 17629
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis DSM 17629, complete sequence.

Gene Summary

Adenine Count

993254 bp

Thymine Count

916171 bp

Guanine Count

725212 bp

Cytosine Count

624393 bp

Genome Length

3344951 bp

Protein-coding Genes

3075 genes

Non-Coding Genes

143 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hica family toxinEUR_RS10480Not AvailablePositive2195588 - 21958459760.82
type ii toxin-antitoxin system hicb family antitoxinEUR_RS10485Not AvailablePositive2195829 - 219619413716.2
yitt family proteinEUR_RS10490Not AvailableNegative2196247 - 219709231077.0
phosphoribosylformylglycinamidine cyclo-ligaseEUR_RS10495Not AvailablePositive2197394 - 219841936350.1
phosphoribosylglycinamide formyltransferaseEUR_RS10500Not AvailablePositive2198471 - 219909722683.6
phosphoribosylamine--glycine ligaseEUR_RS10505Not AvailablePositive2199193 - 220046746059.1
had family hydrolaseEUR_RS10510Not AvailablePositive2200457 - 220110424539.7
eal domain-containing proteinEUR_RS10515Not AvailablePositive2201162 - 2204227116870.0
ncs2 family permeaseEUR_RS10520Not AvailablePositive2204321 - 220575150235.8
nucleotidyltransferase/dna polymerase involved in dna repairEUR_RS10525Not AvailablePositive2206113 - 220790367625.6

Displaying genes 2211 – 2220 of 3218 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.