Acidovorax avenae subsp. avenae ATCC 19860

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Paracidovorax

Description

Acidovorax avenae, previously known as Acidovorax avenae subsp. avenae (Pseudomonas avenae), has recently emerged as a serious pathogen of rice (Oryzae sativa L.). The species is pathogenic to corn and oats, whereas pathogenicity to wheat is variable.This is the type strain (deposited as deposited as Pseudomonas alboprecipitans Rosen), which was isolated from a maize leaf in 1909 (adapted from PMID 18993005). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae
StrainATCC 19860

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidovorax avenae subsp. avenae ATCC 19860
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Paracidovorax avenae ATCC 19860, complete sequence.

Gene Summary

Adenine Count

856258 bp

Thymine Count

853027 bp

Guanine Count

1885165 bp

Cytosine Count

1887720 bp

Genome Length

5482170 bp

Protein-coding Genes

4810 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupin domain-containing proteinACAV_RS03740Not AvailablePositive845065 - 84544213487.4
hpch/hpai aldolase/citrate lyase family proteinACAV_RS03745B2U092Positive845439 - 84624827402.8
iclr family transcriptional regulator c-terminal domain-containing proteinACAV_RS03750P77569Positive846385 - 84725131937.6
monofunctional biosynthetic peptidoglycan transglycosylaseACAV_RS03755A4G8N2Negative847261 - 84799526867.4
shikimate dehydrogenaseACAV_RS03760A1TKF1Negative847992 - 84883729177.9
tonb family proteinACAV_RS03765Not AvailableNegative848888 - 84974832111.3
ribonuclease catalytic domain-containing proteinACAV_RS03770P73177Negative849790 - 85187175265.5
wzy polymerase domain-containing proteinACAV_RS03775Not AvailablePositive852018 - 85368560335.6
yqia/ycfp family alpha/beta fold hydrolaseACAV_RS03780P0A8Z9Negative853722 - 85431821853.1
rod shape-determining protein rodaACAV_RS03785P0ABG8Positive854436 - 85559641724.8

Displaying genes 771 – 780 of 4874 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

307 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 307 metabolites

Health Effects

No health effects information available for this bacterium.