Acidovorax avenae subsp. avenae ATCC 19860

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Paracidovorax

Description

Acidovorax avenae, previously known as Acidovorax avenae subsp. avenae (Pseudomonas avenae), has recently emerged as a serious pathogen of rice (Oryzae sativa L.). The species is pathogenic to corn and oats, whereas pathogenicity to wheat is variable.This is the type strain (deposited as deposited as Pseudomonas alboprecipitans Rosen), which was isolated from a maize leaf in 1909 (adapted from PMID 18993005). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae
StrainATCC 19860

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidovorax avenae subsp. avenae ATCC 19860
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Paracidovorax avenae ATCC 19860, complete sequence.

Gene Summary

Adenine Count

856258 bp

Thymine Count

853027 bp

Guanine Count

1885165 bp

Cytosine Count

1887720 bp

Genome Length

5482170 bp

Protein-coding Genes

4810 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l13ACAV_RS19685A1TUF6Negative4539749 - 454017715549.0
serine/threonine-protein kinaseACAV_RS19690P54738Negative4540385 - 454233168023.3
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjACAV_RS19695P37634Positive4542522 - 454342132518.2
septal ring lytic transglycosylase rlpa family proteinACAV_RS19700Q55752Negative4543428 - 454398819553.9
hypothetical proteinACAV_RS19705Not AvailableNegative4544095 - 454472723570.8
methylenetetrahydrofolate reductaseACAV_RS19710P11003Negative4544798 - 454564630650.5
tlya family rna methyltransferaseACAV_RS19715P9WJ62Negative4545643 - 454664436169.7
adenosylhomocysteinaseACAV_RS19720A1TUG3Negative4546935 - 454836251653.1
acyltransferaseACAV_RS19725P23214Positive4548621 - 454965838288.4
peptide chain release factor 3ACAV_RS19730Q7WDS1Positive4549838 - 455146660157.9

Displaying genes 4031 – 4040 of 4874 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

307 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 307 metabolites

Health Effects

No health effects information available for this bacterium.