Scardovia inopinata F0304

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Scardovia

Description

Scardovia inopinata F0304 is a Gram-negative, coccoid-shaped bacterium that thrives in mesophilic conditions, demonstrating optimal growth at moderate temperatures typically found in the human oral cavity. This microbe functions as a chemoheterotroph, deriving its energy from organic compounds, which it metabolizes to sustain its metabolic needs. Scardovia inopinata is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, although it shows optimal growth under anaerobic conditions. This bacterium is primarily associated with the human oral microbiome, with its presence notably affecting the microbial dynamics within the oral cavity. Scardovia inopinata has been isolated from dental plaque and can be found in various body sites where oral bacteria reside, including the tongue and gingival crevices. Its role in the oral ecosystem is significant, as it is implicated in the development of dental caries, particularly in young children.The ability of Scardovia inopinata to adapt to different oxygen levels enables it to thrive in the diverse microenvironments within the mouth, where it can compete with other oral microbes for nutrients. Research has shown that this bacterium not only contributes to the pathogenesis of caries but may also influence the overall composition and health of the oral microbiome. Its interactions with other bacteria can have implications for the progression of dental diseases and may reveal potential targets for therapeutic interventions aimed at improving oral health. Thus, understanding Scardovia inopinata's metabolic strategies and ecological roles could provide insights into broader microbial dynamics and health outcomes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusScardovia
SpeciesScardovia inopinata
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Scardovia inopinata F0304

Accession NumberADCX00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1482 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+365 - 1894Not Available
5s ribosomal rnaNot AvailableNot Available+375 - 490Not Available
hypothetical proteinHMPREF9020_01476Not Available-49 - 53718141.6
hypothetical proteinHMPREF9020_00002Not Available+713 - 148328287.7
hypothetical proteinHMPREF9020_00003Not Available+1506 - 320360160.5
23s ribosomal rnaNot AvailableNot Available+2282 - 5360Not Available
hypothetical proteinHMPREF9020_00004Not Available-3200 - 406032410.5
adenylosuccinate synthetaseHMPREF9020_00005Not Available-4139 - 544347340.4
5s ribosomal rnaNot AvailableNot Available+5585 - 5700Not Available
fructose-bisphosphate aldolase, class iiHMPREF9020_00006Not Available-5539 - 660037830.6

Displaying genes 1 – 10 of 1534 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

211 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm00026123-oxohexadecanoyl-CoAC37H64N7O18P3SChemical structure of 3-oxohexadecanoyl-CoANot available
Average1019.926Da
Monoisotopic1019.324139Da

Displaying 1–10 of 211 metabolites