Bartonella grahamii as4aup

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Bartonellaceae

Genus

Bartonella

Description

Bartonella grahamii (strain as4aup) is Gram-negative bacterium isolated from a wood mouse (Apodemus sylvaticus) in central Sweden. B. grahamii is present in several species of mice and voles and is likely to be one of the most prevalent Bartonella species in wild rodents. It is transmitted by the rodent flea and is involved in two reported cases of human disease. Through its broad host range, B. grahamii has access to a large gene pool. The rodent-associated Bartonella species have higher copy numbers of genes for putative host-adaptability factors than the related human-specific pathogens. Many of these genes are clustered and located in a highly dynamic region (HDR) of the chromosome containing many gene clusters for secretion systems. A novel gene transfer agent packages the bacterial genome, with an over-representation of the amplified DNA, in 14 kb pieces. Consequently, the HDR is extensively amplified and packaged into bacteriophage particles. This is the first observation associating the products of run-off replication with a gene transfer agent, and the first demonstration of targeted packaging of a portion of the bacterial chromosome into viral particles. The combination of these two systems promotes diversification and rapid spread of selectively favored host-adaptability genes within and among Bartonella populations, facilitating host shifts. Thus the genome sequence of B. grahamii has been sequenced to learn more about the mechanisms and selective forces driving run-off replication and the DNA content of bacteriophage particles. (Adaptated from PMID: 19578403). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBartonellaceae
GenusBartonella
SpeciesBartonella grahamii
Strainas4aup

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Bartonella grahamii as4aup
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature35
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Apodemus sylvaticus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Bartonella grahamii as4aup plasmid pBGR3, complete sequence.

Gene Summary

Adenine Count

9066 bp

Thymine Count

8869 bp

Guanine Count

4799 bp

Cytosine Count

5458 bp

Genome Length

28192 bp

Protein-coding Genes

32 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ti-type conjugative transfer relaxase traaBGR_RS09985P55418Negative16578 - 20288139964.0
trac family proteinBGR_RS09990Not AvailablePositive20525 - 207287860.43
conjugal transfer protein tradBGR_RS09995Not AvailablePositive20781 - 210058284.95
ti-type conjugative transfer system protein tragBGR_RS10000Q6G2A8Positive20983 - 2289671900.2
replication/maintenance protein replBGR_RS10005Not AvailablePositive23274 - 2372917569.5
type ii toxin-antitoxin system rele/pare family toxinBGR_RS10010Q7A225Positive23964 - 2424210523.8
higa family addiction module antitoxinBGR_RS10015Q57475Positive24260 - 2454710373.8
hypothetical proteinBGR_RS10020Not AvailableNegative24597 - 2499214854.0
hypothetical proteinBGR_RS10025Not AvailableNegative25171 - 2583924624.8
helix-turn-helix domain-containing proteinBGR_RS10030A6U5H5Positive26691 - 2704713748.7

Displaying genes 21 – 30 of 32 in total

Metabolites

1545 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002146(1R,2S)-1,2-dihydronaphthalene-1,2-diolC10H10O2Chemical structure of (1R,2S)-1,2-dihydronaphthalene-1,2-diolNot available
Average162.1852Da
Monoisotopic162.0680796Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da

Displaying 1–10 of 1545 metabolites

Health Effects

No health effects information available for this bacterium.