Bartonella grahamii as4aup

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Bartonellaceae

Genus

Bartonella

Description

Bartonella grahamii (strain as4aup) is Gram-negative bacterium isolated from a wood mouse (Apodemus sylvaticus) in central Sweden. B. grahamii is present in several species of mice and voles and is likely to be one of the most prevalent Bartonella species in wild rodents. It is transmitted by the rodent flea and is involved in two reported cases of human disease. Through its broad host range, B. grahamii has access to a large gene pool. The rodent-associated Bartonella species have higher copy numbers of genes for putative host-adaptability factors than the related human-specific pathogens. Many of these genes are clustered and located in a highly dynamic region (HDR) of the chromosome containing many gene clusters for secretion systems. A novel gene transfer agent packages the bacterial genome, with an over-representation of the amplified DNA, in 14 kb pieces. Consequently, the HDR is extensively amplified and packaged into bacteriophage particles. This is the first observation associating the products of run-off replication with a gene transfer agent, and the first demonstration of targeted packaging of a portion of the bacterial chromosome into viral particles. The combination of these two systems promotes diversification and rapid spread of selectively favored host-adaptability genes within and among Bartonella populations, facilitating host shifts. Thus the genome sequence of B. grahamii has been sequenced to learn more about the mechanisms and selective forces driving run-off replication and the DNA content of bacteriophage particles. (Adaptated from PMID: 19578403). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBartonellaceae
GenusBartonella
SpeciesBartonella grahamii
Strainas4aup

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Bartonella grahamii as4aup
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature35
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Apodemus sylvaticus- Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Bartonella grahamii as4aup

Accession NumberNC_012847.1

Gene Summary

Adenine Count

9066 bp

Thymine Count

8869 bp

Guanine Count

4799 bp

Cytosine Count

5458 bp

Genome Length

28192 bp

Protein-coding Genes

32 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinBGR_RS09890Not Available+226 - 4779085.12
type ii toxin-antitoxin system vapc family toxinBGR_RS09895Not Available+474 - 87214283.6
recombinase family proteinBGR_RS09900Not Available-1094 - 174724272.8
tir domain-containing proteinBGR_RS09905Q9JMR6-1920 - 237517273.9
hypothetical proteinBGR_RS11240Not Available-2421 - 25705969.95
replication initiation protein repcBGR_RS09910Not Available-3073 - 441050846.5
trbc/virb2 family proteinBGR_RS09915Q9R3F2+5269 - 561912447.5
type iv secretion system protein virb3BGR_RS09920Q9S3N1+5638 - 596112125.1
virb4 family type iv secretion/conjugal transfer atpaseBGR_RS09925Q9R2W4+5961 - 832189518.9
type iv secretion system proteinBGR_RS09930Not Available+8318 - 907327496.4

Displaying genes 1 – 10 of 32 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–1 of 1 metabolites