Sphingobium sp. SYK-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. SYK-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence.

Gene Summary

Adenine Count

26691 bp

Thymine Count

26282 bp

Guanine Count

48419 bp

Cytosine Count

47409 bp

Genome Length

148801 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fic family proteinSLG_RS01695Not AvailableNegative350175 - 35131443080.6
duf2726 domain-containing proteinSLG_RS01700Not AvailablePositive351530 - 35218923919.9
phosphomethylpyrimidine synthase thicSLG_RS01705Not AvailableNegative352220 - 35409468901.6
duf2065 domain-containing proteinSLG_RS01710Not AvailableNegative354112 - 35453114422.1
mipa/ompv family proteinSLG_RS01715Not AvailableNegative354760 - 35563530096.8
phosphoribosylanthranilate isomeraseSLG_RS01720Not AvailableNegative355903 - 35658923576.3
udp-glucose 4-epimerase galeSLG_RS01725Not AvailableNegative356849 - 35785335724.8
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomeraseSLG_RS01730Not AvailableNegative358043 - 35910137270.9
type ii secretion system f family proteinSLG_RS01735Not AvailableNegative359174 - 36015735561.2
type ii secretion system f family proteinSLG_RS01740Not AvailableNegative360173 - 36116836720.2

Displaying genes 581 – 590 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002727(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7Chemical structure of (1E)-4-oxobut-1-ene-1,2,4-tricarboxylateNot available
Average199.096Da
Monoisotopic198.9895232Da
BASm00031792-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8Chemical structure of 2-hydroxy-4-oxobutane-1,2,4-tricarboxylateNot available
Average217.111Da
Monoisotopic217.0000879Da
BASm00033374-hydroxy-4-methyl-2-oxoglutarateC6H6O6Chemical structure of 4-hydroxy-4-methyl-2-oxoglutarateNot available
Average174.109Da
Monoisotopic174.0175351Da
BASm00033572-oxo-2H-pyran-4,6-dicarboxylateC7H2O6Chemical structure of 2-oxo-2H-pyran-4,6-dicarboxylateNot available
Average182.088Da
Monoisotopic181.9862349Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0012597(6R)-10-formyltetrahydrofolateC20H21N7O7Chemical structure of (6R)-10-formyltetrahydrofolateNot available
Average471.431Da
Monoisotopic471.151343204Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.