Sphingobium sp. SYK-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Sphingomonadales
Family	Sphingobiaceae
Genus	Sphingobium
Species	Sphingobium sp. SYK-6
Strain	No strain

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Yes
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence.

NC_015974.1 NC_015976.1

Gene Summary

Adenine Count

26691 bp

Thymine Count

26282 bp

Guanine Count

48419 bp

Cytosine Count

47409 bp

Genome Length

148801 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
m20/m25/m40 family metallo-hydrolase	SLG_RS16715	Not Available	Negative	3640462 - 3641979	53434.2
translational gtpase typa	SLG_RS16720	Not Available	Negative	3642153 - 3643985	67094.3
hypothetical protein	SLG_RS16725	Not Available	Positive	3644242 - 3644637	13685.5
ybal family putative k(+) efflux transporter	SLG_RS16730	Not Available	Positive	3644850 - 3646529	59177.8
class i sam-dependent methyltransferase	SLG_RS16735	Not Available	Positive	3647005 - 3647865	30225.8
duf4893 domain-containing protein	SLG_RS20580	Not Available	Positive	3648026 - 3648727	25360.2
hypothetical protein	SLG_RS21530	Not Available	Positive	3649301 - 3649552	8340.43
hypothetical protein	SLG_RS21535	Not Available	Positive	3649545 - 3649760	7500.79
hypothetical protein	SLG_RS21540	Not Available	Positive	3649760 - 3650035	10775.1
si-specific nad(p)(+) transhydrogenase	SLG_RS16745	Not Available	Negative	3650379 - 3651788	51375.1

Displaying genes 3571 – 3580 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000686	vanillateC8H7O4	Not available	Average167.1388Da Monoisotopic167.0344337Da
BASm0001279	(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6	Not available	Average457.4399Da Monoisotopic457.1709815Da
BASm0001977	3,4-dihydroxybenzoateC7H5O4	Not available	Average153.114Da Monoisotopic153.019332221Da
BASm0002727	(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7	Not available	Average199.096Da Monoisotopic198.9895232Da
BASm0003179	2-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8	Not available	Average217.111Da Monoisotopic217.0000879Da
BASm0003337	4-hydroxy-4-methyl-2-oxoglutarateC6H6O6	Not available	Average174.109Da Monoisotopic174.0175351Da
BASm0003357	2-oxo-2H-pyran-4,6-dicarboxylateC7H2O6	Not available	Average182.088Da Monoisotopic181.9862349Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da
BASm0012597	(6R)-10-formyltetrahydrofolateC20H21N7O7	Not available	Average471.431Da Monoisotopic471.151343204Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.