Sphingobium sp. SYK-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Sphingomonadales
Family	Sphingobiaceae
Genus	Sphingobium
Species	Sphingobium sp. SYK-6
Strain	No strain

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Yes
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence.

NC_015974.1 NC_015976.1

Gene Summary

Adenine Count

26691 bp

Thymine Count

26282 bp

Guanine Count

48419 bp

Cytosine Count

47409 bp

Genome Length

148801 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
thymidylate synthase	SLG_RS11610	Not Available	Negative	2524610 - 2525593	36995.0
Trna-pro	Not Available	Not Available	Positive	2525814 - 2525890	Not Available
hypothetical protein	SLG_RS11620	Not Available	Positive	2526028 - 2526330	10485.3
diaminopimelate epimerase	SLG_RS11625	Not Available	Positive	2526611 - 2527438	29322.2
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab	SLG_RS11630	Not Available	Positive	2527435 - 2528682	44910.3
signal recognition particle-docking protein ftsy	SLG_RS11635	Not Available	Positive	2528675 - 2529607	33332.2
septation protein ispz	SLG_RS11640	Not Available	Positive	2529690 - 2530232	19998.3
antibiotic biosynthesis monooxygenase	SLG_RS11645	Not Available	Negative	2530273 - 2530635	12957.0
class i sam-dependent methyltransferase	SLG_RS11650	Not Available	Positive	2530713 - 2531336	22466.2
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	SLG_RS11655	Not Available	Negative	2531302 - 2532483	44653.1

Displaying genes 2541 – 2550 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000686	vanillateC8H7O4	Not available	Average167.1388Da Monoisotopic167.0344337Da
BASm0001279	(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6	Not available	Average457.4399Da Monoisotopic457.1709815Da
BASm0001977	3,4-dihydroxybenzoateC7H5O4	Not available	Average153.114Da Monoisotopic153.019332221Da
BASm0002727	(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7	Not available	Average199.096Da Monoisotopic198.9895232Da
BASm0003179	2-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8	Not available	Average217.111Da Monoisotopic217.0000879Da
BASm0003337	4-hydroxy-4-methyl-2-oxoglutarateC6H6O6	Not available	Average174.109Da Monoisotopic174.0175351Da
BASm0003357	2-oxo-2H-pyran-4,6-dicarboxylateC7H2O6	Not available	Average182.088Da Monoisotopic181.9862349Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da
BASm0012597	(6R)-10-formyltetrahydrofolateC20H21N7O7	Not available	Average471.431Da Monoisotopic471.151343204Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.