Bacteroides clarus

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides clarus is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in all body sites of various species, including the human gut, mouth, and skin, and is an obligate anaerobe. The gram-negative characteristic is due to the composition of its cell wall, which consists of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients from its surroundings. As a mesophilic microbe, Bacteroides clarus grows best in temperatures between 20-45°C, making it well-suited to the human body's normal temperature range.As a chemoheterotroph, Bacteroides clarus relies on chemical reactions to produce energy and requires organic compounds as a source of carbon and energy. This is in contrast to autotrophic microbes, which can produce their own food using light or chemical energy. The presence of Bacteroides clarus in all body sites is a testament to its ability to adapt and thrive in diverse environments. Its obligate anaerobic nature means that it cannot survive in the presence of oxygen, and therefore, is typically found in areas with low oxygen levels, such as the gut. ↵Bacteroides clarus plays a crucial role in the breakdown and utilization of complex polysaccharides in the human gut, contributing to the maintenance of a healthy gut microbiome. Its unique characteristics and abilities have led researchers to investigate its potential as a probiotic agent, with studies exploring its use in the prevention and treatment of various diseases, including inflammatory bowel disease and obesity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides clarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides clarus
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides clarus strain An43 An43_contig_44, whole genome

Gene Summary

Adenine Count

1151390 bp

Thymine Count

1159125 bp

Guanine Count

959910 bp

Cytosine Count

947149 bp

Genome Length

4217574 bp

Protein-coding Genes

3424 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hybrid sensor histidine kinase/response regulatorB5F97_02790Not AvailableNegative751294 - 755637165974.0
n-acetyltransferaseB5F97_02795Not AvailableNegative755762 - 75689844273.6
sodium:proton exchangerB5F97_02800Not AvailableNegative756956 - 75791833222.2
mechanosensitive ion channel protein mscsB5F97_02805Not AvailablePositive758133 - 75993868921.3
acid phosphataseB5F97_02810Not AvailableNegative760112 - 76104435597.6
tonb-dependent receptorB5F97_02815Not AvailableNegative761087 - 763855104395.0
sam-dependent methyltransferaseB5F97_02820Not AvailableNegative764017 - 76528247242.7
d-alanyl-d-alanine dipeptidaseB5F97_02825Not AvailableNegative765541 - 76628727966.8
lyttr family transcriptional regulatorB5F97_02830Not AvailableNegative766428 - 76723730846.9
hypothetical proteinB5F97_02835Not AvailableNegative767241 - 76801429364.9

Displaying genes 601 – 610 of 3510 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

90 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da

Displaying 1–10 of 90 metabolites

Health Effects

No health effects information available for this bacterium.