Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein, arsr family | SAMN05421747_102350 | Not Available | Negative | 1136190 - 1136510 | 12046.5 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05421747_102351 | Not Available | Negative | 1136503 - 1136922 | 16170.4 |
| protein of unknown function | SAMN05421747_102352 | Not Available | Negative | 1136925 - 1137482 | 21453.1 |
| hypothetical protein | SAMN05421747_102353 | Not Available | Negative | 1137454 - 1137558 | 3974.98 |
| putative transposase | SAMN05421747_102354 | Not Available | Negative | 1138006 - 1138158 | 5675.45 |
| uncharacterized membrane protein yeih | SAMN05421747_1031 | Not Available | Positive | 1138442 - 1139044 | 21385.7 |
| peptide deformylase | SAMN05421747_1032 | Not Available | Negative | 1139051 - 1139620 | 21703.3 |
| exodeoxyribonuclease vii large subunit | SAMN05421747_1033 | Not Available | Positive | 1139751 - 1141085 | 49940.3 |
| exodeoxyribonuclease vii small subunit | SAMN05421747_1034 | Not Available | Positive | 1141089 - 1141298 | 7724.06 |
| aerobic c4-dicarboxylate transport protein | SAMN05421747_1035 | Not Available | Negative | 1141302 - 1142552 | 44767.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
