Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_102340 | Not Available | Positive | 1124513 - 1124707 | 7620.17 |
| mrna interferase yafq | SAMN05421747_102341 | Not Available | Positive | 1124707 - 1124979 | 10581.9 |
| hypothetical protein | SAMN05421747_102342 | Not Available | Negative | 1125616 - 1125927 | 11991.6 |
| hypothetical protein | SAMN05421747_102343 | Not Available | Negative | 1125940 - 1127346 | 51130.4 |
| hypothetical protein | SAMN05421747_102344 | Not Available | Negative | 1127402 - 1129009 | 60049.9 |
| protein of unknown function | SAMN05421747_102345 | Not Available | Negative | 1129018 - 1129839 | 31679.9 |
| tonb-dependent receptor | SAMN05421747_102346 | Not Available | Negative | 1129845 - 1133321 | 131075.0 |
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421747_102347 | Not Available | Negative | 1133510 - 1134547 | 38726.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_102348 | Not Available | Negative | 1134711 - 1135295 | 22344.9 |
| acetyltransferase (gnat) family protein | SAMN05421747_102349 | Not Available | Negative | 1135491 - 1136135 | 25091.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
