Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglycosylase slt domain-containing protein | SAMN05421747_102270 | Not Available | Negative | 1058146 - 1058955 | 30625.7 |
| hypothetical protein | SAMN05421747_102271 | Not Available | Positive | 1058976 - 1059098 | 4659.61 |
| 23s rrna pseudouridine2605 synthase | SAMN05421747_102272 | Not Available | Positive | 1059200 - 1060186 | 37403.6 |
| predicted phosphohydrolase, cof family, had superfamily | SAMN05421747_102273 | Not Available | Positive | 1060247 - 1060711 | 17435.8 |
| hypothetical protein | SAMN05421747_102274 | Not Available | Negative | 1060675 - 1061646 | 36818.1 |
| dna-directed rna polymerase subunit beta' | SAMN05421747_102275 | Not Available | Negative | 1061801 - 1066081 | 159470.0 |
| dna-directed rna polymerase subunit beta | SAMN05421747_102276 | Not Available | Negative | 1066116 - 1069925 | 142836.0 |
| large subunit ribosomal protein l7/l12 | SAMN05421747_102277 | Not Available | Negative | 1070097 - 1070477 | 12979.7 |
| large subunit ribosomal protein l10 | SAMN05421747_102278 | Not Available | Negative | 1070553 - 1071074 | 18651.7 |
| large subunit ribosomal protein l1 | SAMN05421747_102279 | Not Available | Negative | 1071077 - 1071775 | 24790.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
