Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-6-phosphate isomerase, cupin superfamily | SAMN05421747_102240 | Not Available | Positive | 1018581 - 1019081 | 19003.2 |
| choline dehydrogenase | SAMN05421747_102241 | Not Available | Negative | 1019088 - 1020803 | 64740.0 |
| gluconate 2-dehydrogenase subunit 3 | SAMN05421747_102242 | Not Available | Negative | 1020816 - 1021349 | 19607.6 |
| glycosyl hydrolase family 76 | SAMN05421747_102243 | Not Available | Negative | 1021391 - 1022548 | 44149.8 |
| predicted alpha-1,6-mannanase, gh76 family | SAMN05421747_102244 | Not Available | Negative | 1022574 - 1023755 | 45667.0 |
| suse outer membrane protein | SAMN05421747_102245 | Not Available | Negative | 1023782 - 1024963 | 44743.6 |
| starch-binding associating with outer membrane | SAMN05421747_102246 | Not Available | Negative | 1025004 - 1026617 | 61581.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_102247 | Not Available | Negative | 1026645 - 1030040 | 126626.0 |
| fecr protein | SAMN05421747_102248 | Not Available | Negative | 1030248 - 1031486 | 45959.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_102249 | Not Available | Negative | 1031581 - 1032186 | 23362.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
