Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl protease | SAMN05421747_102180 | Not Available | Positive | 951656 - 953002 | 50115.2 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN05421747_102181 | Not Available | Positive | 953291 - 953836 | 20593.1 |
| 2'-5' rna ligase | SAMN05421747_102182 | Not Available | Positive | 953946 - 954554 | 23629.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_102183 | Not Available | Negative | 954557 - 955144 | 22981.8 |
| glycine hydroxymethyltransferase | SAMN05421747_102184 | Not Available | Negative | 955383 - 956654 | 46078.6 |
| hypothetical protein | SAMN05421747_102185 | Not Available | Negative | 956718 - 957254 | 20068.5 |
| iron-sulfur cluster assembly protein | SAMN05421747_102186 | Not Available | Positive | 957358 - 957705 | 12334.6 |
| isoleucyl-trna synthetase | SAMN05421747_102187 | Not Available | Positive | 957891 - 961304 | 129862.0 |
| transcriptional regulator, trar/dksa family | SAMN05421747_102188 | Not Available | Positive | 961309 - 961695 | 14409.2 |
| signal peptidase ii | SAMN05421747_102189 | Not Available | Positive | 961702 - 962352 | 24547.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
