Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pria4b orf-3-like protein | SAMN05421747_102110 | Not Available | Negative | 884124 - 884708 | 22613.1 |
| hdig domain-containing protein | SAMN05421747_102111 | Not Available | Negative | 884790 - 886214 | 54396.9 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN05421747_102112 | Not Available | Negative | 886277 - 887332 | 38707.4 |
| protein of unknown function | SAMN05421747_102113 | Not Available | Negative | 887394 - 887615 | 8130.43 |
| 16s rrna (adenine1518-n6/adenine1519-n6)-dimethyltransferase | SAMN05421747_102114 | Not Available | Positive | 887650 - 888429 | 29134.3 |
| d-3-phosphoglycerate dehydrogenase | SAMN05421747_102115 | Not Available | Positive | 888426 - 889391 | 35476.6 |
| ubia prenyltransferase family protein | SAMN05421747_102116 | Not Available | Negative | 889377 - 890261 | 33225.0 |
| acetyl-coa synthetase | SAMN05421747_102117 | Not Available | Positive | 890368 - 892287 | 71794.6 |
| hypothetical protein | SAMN05421747_102118 | Not Available | Negative | 892294 - 892686 | 14142.2 |
| hypothetical protein | SAMN05421747_102119 | Not Available | Negative | 892713 - 893024 | 10953.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
