Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase, gh43 family | SAMN05421747_10220 | Not Available | Negative | 783566 - 784633 | 39906.2 |
| f5/8 type c domain-containing protein | SAMN05421747_10221 | Not Available | Negative | 784649 - 785794 | 42511.0 |
| protein of unknown function | SAMN05421747_10222 | Not Available | Negative | 785815 - 787017 | 44430.9 |
| starch-binding associating with outer membrane | SAMN05421747_10223 | Not Available | Negative | 787050 - 788954 | 73227.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_10224 | Not Available | Negative | 788966 - 792190 | 119559.0 |
| alpha-glucuronidase | SAMN05421747_10225 | Not Available | Negative | 792243 - 794492 | 84103.8 |
| laci family transcriptional regulator | SAMN05421747_10226 | Not Available | Negative | 794504 - 795550 | 38685.4 |
| signal transduction histidine kinase | SAMN05421747_10227 | Not Available | Positive | 795892 - 799077 | 120634.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05421747_10228 | Not Available | Positive | 799052 - 799834 | 29386.4 |
| glycosyl hydrolases family 2, tim barrel domain | SAMN05421747_10229 | Not Available | Negative | 799919 - 801787 | 70134.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
