Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd-(d/e)xk nuclease superfamily protein | SAMN05421747_10149 | Not Available | Negative | 52405 - 55305 | 109173.0 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421747_10150 | Not Available | Positive | 55345 - 56067 | 27405.0 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421747_10151 | Not Available | Positive | 56125 - 57069 | 35348.3 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN05421747_10152 | Not Available | Negative | 57046 - 60354 | 124406.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_10153 | Not Available | Positive | 60555 - 61112 | 22032.4 |
| protein of unknown function | SAMN05421747_10154 | Not Available | Positive | 61172 - 62326 | 42146.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_10155 | Not Available | Positive | 62456 - 66052 | 134888.0 |
| susd family protein | SAMN05421747_10156 | Not Available | Positive | 66066 - 67481 | 55441.0 |
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN05421747_10157 | Not Available | Positive | 67530 - 68381 | 32555.6 |
| hypothetical protein | SAMN05421747_10158 | Not Available | Positive | 68391 - 69830 | 53148.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
