Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, arsr family | SAMN05421747_101558 | Not Available | Negative | 703470 - 703805 | 12299.9 |
| hypothetical protein | SAMN05421747_101559 | Not Available | Negative | 703762 - 703947 | 7194.43 |
| aldose 1-epimerase | SAMN05421747_101560 | Not Available | Positive | 704130 - 705371 | 45391.0 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421747_101561 | Not Available | Positive | 705554 - 706909 | 50504.0 |
| copper homeostasis protein | SAMN05421747_101562 | Not Available | Positive | 707197 - 707931 | 26535.1 |
| hypothetical protein | SAMN05421747_101563 | Not Available | Negative | 707938 - 708120 | 6834.51 |
| Trna-cys | Not Available | Not Available | Positive | 708154 - 708224 | Not Available |
| outer membrane protein beta-barrel domain-containing protein | SAMN05421747_101565 | Not Available | Positive | 708490 - 709131 | 23261.5 |
| ssu ribosomal protein s10p | SAMN05421747_101566 | Not Available | Negative | 709252 - 709557 | 11420.1 |
| elongation factor g | SAMN05421747_101567 | Not Available | Negative | 709622 - 711736 | 77914.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
