Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease, protease subunit | SAMN05421747_101538 | Not Available | Positive | 681349 - 682041 | 25283.5 |
| transcriptional regulator, contains xre-family hth domain | SAMN05421747_101539 | Not Available | Negative | 682131 - 682505 | 14285.2 |
| hypothetical protein | SAMN05421747_101540 | Not Available | Positive | 682587 - 682775 | 7133.84 |
| rna polymerase sigma factor, sigma-70 family | SAMN05421747_101541 | Not Available | Positive | 682793 - 683611 | 31530.6 |
| transposase, is605 orfb family, central region | SAMN05421747_101542 | Not Available | Positive | 683614 - 684708 | 42681.8 |
| hypothetical protein | SAMN05421747_101543 | Not Available | Negative | 685987 - 686409 | 15630.6 |
| ph domain-containing protein | SAMN05421747_101544 | Not Available | Positive | 686508 - 686972 | 17475.6 |
| serpin b | SAMN05421747_101545 | Not Available | Positive | 687213 - 688478 | 46108.2 |
| hypothetical protein | SAMN05421747_101546 | Not Available | Negative | 688551 - 688760 | 6955.85 |
| acetyl-coa carboxylase, carboxyltransferase component | SAMN05421747_101547 | Not Available | Positive | 688878 - 690509 | 58704.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
