Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | SAMN05421747_101488 | Not Available | Negative | 642100 - 643053 | 34260.2 |
| transketolase | SAMN05421747_101489 | Not Available | Negative | 643061 - 643906 | 30522.3 |
| acyl-coa thioesterase-1 | SAMN05421747_101490 | Not Available | Negative | 643946 - 644644 | 24973.0 |
| fe-s cluster biogenesis protein nfua, 4fe-4s-binding domain | SAMN05421747_101491 | Not Available | Negative | 644649 - 645203 | 20430.3 |
| adenylosuccinate lyase | SAMN05421747_101492 | Not Available | Negative | 645267 - 646610 | 50244.9 |
| hypothetical protein | SAMN05421747_101493 | Not Available | Negative | 646652 - 646843 | 6740.86 |
| hypothetical protein | SAMN05421747_101494 | Not Available | Negative | 646897 - 647796 | 32574.5 |
| hypothetical protein | SAMN05421747_101495 | Not Available | Positive | 647917 - 648201 | 10619.8 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN05421747_101496 | Not Available | Positive | 648223 - 648726 | 19209.0 |
| hypothetical protein | SAMN05421747_101497 | Not Available | Positive | 648750 - 648947 | 7568.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
